Methyl-CpG-binding protein 2 reads histone methylation via an aromatic cage to regulate gene expression and chromatin association
Padhan J, and Sudhamalla B.
J. Biol. Chem., 2026, 302, 111115
Mechanistic insights into DNA binding by BD1 of the TAF1 tandem bromodomain module
Yadav Y, Chyne P, and Sudhamalla B
Biochem J. 2025, 482, 1415-1429.
DOI: 10.1042/BCJ20253064
ATAD2 and TWIST1 Interaction Promotes MYC Activation in Colorectal Carcinoma
Roy A, and Sudhamalla B
Biochemistry, 2025,64, 114-126
Uncovering the non-histone interactome of the BRPF1 bromodomain using site-specific azide-acetyllysine photochemistry
Barman S, Padhan J, and Sudhamalla B
J. Biol. Chem., 2024, 300, 105551
Integrated virtual screening and MD simulation approaches toward discovering potential inhibitors for targeting BRPF1 bromodomain in hepatocellular carcinoma
Barman S, Bardhan I, Padhan J, and Sudhamalla B
J. Mol. Graph. Model., 2024, 126, 108642
Amyloid β-Peptide Segment Conjugated Side-Chain Proline-Based Polymers as Potent Inhibitors in Lysozyme Amyloidosis
Nayak K, Ghosh P, Barman S, Sudhamalla B, Theato P, De P
Bioconjug. Chem., 2024, 35, 312-323
Novel insights into the recognition of acetylated histone H4 tail by the TRIM24 PHD-Bromo module
Bardhan I, Barman S, Roy A, and Sudhamalla B
Biochem J., 2023, 480, 629-647
Insulin fibril inhibition using glycopolymeric nanoassemblies
Bera A, Ghosh P, Barman S, Bhattacharya S, Sudhamalla B, Goswami K, De P
Biomater. Sci., 2023, 11, 3574-3588
Uncovering the Domain-Specific Interactome of the TAF1 Tandem Reader Using Site-Specific Azide-Acetyllysine Photochemistry
Yadav Y, Barman S, Roy A, Padhan J, and Sudhamalla B
Biochemistry, 2023, 62, 270-280
Identification of novel natural product inhibitors of BRD4 using high throughput virtual screening and MD simulation
Barman S, Sahoo SS, Padhan J and Sudhamalla B
J. Biomol. Struct. Dyn., 2022, 1-13
Molecular Insights into the Recognition of Acetylated Histone Modifications by the BRPF2 Bromodomain
Barman S, Roy A, Padhan J and Sudhamalla B
Biochemistry, 2022, 61, 1774-1789
DOI: 10.1021/acs.biochem.2c00297
Hydrophobic cavity-directed azide-acetyllysine photochemistry for profiling non-histone interacting partners of bromodomain protein 1
Kuwik J, Wagner S, Sudhamalla B, Debiec R, and Islam K
RSC Chem. Biol., 2022, 3, 1061-1068
Designing of RNA aptamer against DNA binding domain of the glucocorticoid receptor: A response element-based in-silico approach
Kandasamy S, Sudhamalla B, Naskar D
J. Biomol. Struct. Dyn., 2022, 40, 1120-1127
Engineering an acetyllysine reader with a photocrosslinking amino acid for interactome profiling
Roy A, Barman S, Padhan J and Sudhamalla B
Chem. Commun., 2021, 57, 9866-9869
Insights into the Molecular Mechanisms of Histone Code Recognition by the BRPF3 Bromodomain
Barman S, Roy A, Bardhan I, Kandasamy T, Shivani S and Sudhamalla B
Chem. Asian. J., 2021, 16, 3404-3412
Catalytic Space Engineering as a Strategy to Activate C-H Oxidation on 5-Methylcytosine in Mammalian Genome
Sappa S, Dey D, Sudhamalla B and Islam K
J. Am. Chem. Soc., 2021, 143, 11891-11896
Engineering bromodomains with a photoactive amino acid by engaging 'Privileged' tRNA synthetases
Wagner S, Sudhamalla B, Mannes P, Sappa S, Kavoosi S, Dey D, Wang S and Islam K
Chem. Commun., 2020, 56, 3641-3644
Site- and degree-specific C-H oxidation on 5-methylcytosine homologues for probing active DNA demethylation
Kavoosi S, Sudhamalla B, Dey D, Shriver K, Arora S, Sappa S and Islam K
Chem. Sci., 2019, 10, 10550-10555
Complementary Steric Engineering at the Protein-Ligand Interface for Analogue-Sensitive TET Oxygenases
Sudhamalla B, Wang S, Snyder V, Kavoosi S, Arora S and Islam K
J. Am. Chem. Soc., 2018, 140, 10263-10269
Specific Acetylation Patterns of H2A.Z Form Transient Interactions with the BPTF Bromodomain
Gabriella T. Perell, Neeraj K. Mishra, Sudhamalla B, Peter D. Ycas, Islam K, William C.K. Pomerantz
Biochemistry, 2017, 56, 4607-4615
A rapid mass spectrometric method for the measurement of catalytic activity of ten-eleven translocation enzymes
Sudhamalla B, Dey D, Breski M, Islam K
Anal. Biochem., 2017, 534, 28-35
Site-specific azide-acetyllysine photochemistry on epigenetic readers for interactome profiling
Sudhamalla B, Dey D, Breski M, Nguyen T, Islam K
Chem. Sci., 2017, 8, 4250-4256
Engineering Biological C-H Functionalization Leads to Allele-Specific Regulation of Histone Demethylases
Breski M, Dey D, Obringer S, Sudhamalla B and Islam K
J. Am. Chem. Soc., 2016, 138, 13505-13508
Cysteine endoprotease activity of human ribosomal protein S4 is entirely due to the C-terminal domain, and is consistent with Michaelis-Menten mechanism
Sudhamalla B, Kumar M, Roy KR, Kumar RS, and Bhuyan AK
Biochim. Biophys. Acta, 2013, 1830, 5342-9
Enzyme dimension of the ribosomal protein S4 across plant and animal kingdoms
Sudhamalla B, Kumar M, Kumar RS, Sashi P, Yasin UM, Ramakrishna D, Rao PN, and Bhuyan AK
Biochim. Biophys. Acta, 2013, 1830, 5335-41
Arrested cell proliferation through cysteine protease activity of eukaryotic ribosomal protein S4
M Yadaiah, Sudhamalla B, Rao PN, Roy KR, Ramakrishna D, Hussain Syed G, Ramaiah KV and Bhuyan AK
FASEB J., 2013, 27, 803-10
Docking and molecular dynamics studies of peptide inhibitors of ornithine decarboxylase: a rate-limiting enzyme for the metabolism of Fusarium solani
Sanchita, Chauhan R, Soni G, Sudhamalla B and Sharma A
J. Biomol. Struct. Dyn., 2013, 31, 874-87
Cysteine protease attribute of eukaryotic ribosomal protein S4
Sudhamalla B, M Yadaiah, D Ramakrishna and Bhuyan AK
Biochim. Biophys. Acta, 2012, 1820, 1535-42
RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug
Mamidala P, Wijeratne AJ, Wijeratne S, Kornacker K, Sudhamalla B, Rivera-Vega LJ, Hoelmer A, Meulia T, Jones SC and Mittapalli O
BMC Genomics, 2012, 13, 6
Cloning, Escherichia coli expression, purification, characterization, and enzyme assay of the ribosomal protein S4 from wheat seedlings (Triticum vulgare)
Yadaiah M, Nageswara Rao P, Sudhamalla B, Ramakrishna D, Mahammad Yasin U and Bhuyan AK
Protein. Expr. Purif., 2012, 81, 55-62
Molecular Dynamics Simulation and Binding Studies of β-Sitosterol with Human Serum Albumin and Its Biological Relevance
Sudhamalla B, Gokara M, Ahalawat N, Amooru D G, Subramanyam R
J. Phys. Chem. B, 2010, 114, 9054-9062
Interaction studies of coumaroyltyramine with human serum albumin and its biological importance
Neelam S, Gokara, M, Sudhamalla B, Amooru DG and Subramanyam R
J. Phys. Chem. B, 2010, 114, 3005-12
Molecular interaction studies of trimethoxy flavone with human serum albumin
Gokara M, Sudhamalla B, Amooru DG and Subramanyam R
PLoS One, 2010, 5, e8834
Novel binding studies of human serum albumin with trans-feruloyl maslinic acid
Subramanyam R, Goud M, Sudhamalla B, Reddeem E, Gollapudi A, Nellaepalli S, Yadavalli V, Chinnaboina M and Amooru DG
J. Photochem. Photobiol. B, 2009, 95, 81-8
