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Research Domains
of IISER Kolkata Faculties

Indian Institute of Science Education and Research Kolkata (IISER Kolkata) was established in 2006 by the Ministry of Human Resource Development (now Ministry of Education), Government of India. The IISER system was created to achieve excellence in the basic sciences.

Animal Facility of IISER Kolkata is one of the most important infrastructure facilities of the institute. The State of the Art, Animal Facility (SAF) is engaged in breeding and providing mice for experiments in both inter and intra institute R&D Programs. We also provide service based animal experiment facilities at SAF based on the need and requirement of students from other institutes and universities.

SAF is located near the main gate at the beautiful campus of IISER Kolkata, isolated from human occupancy & away from noise and pollution, providing an excellent environment for animal care and research. SAF is equipped ready to facilitate small animal experimentation with quarantine, breeding, holding, experimental and sick rooms for rodents and rabbits.

All Inter and Intra Institute Animal experimentation are conducted under the control of the Institutional Animal Ethics Committee of IISER K and usage of animals are monitored and regulated strictly as per the guidelines of Government of India (CCSEA).

The IISERK SAF is facilitated with modern equipment like Individually Ventilated caging (IVC) systems, Animal Cage Changing Station, Bio safety Cabinets, Biochemical Analyzer, In vivo Imaging & etc. It is also facilitated with a separate Molecular Biology Room for Genetic Analysis, Microbiology Room for Microbial Testing, ABSL and ABLS 2 facility, Zebrafish Facility, Bird Facility . In future SAF is planning to incorporate many other modern equipment and facilities aiming to provide a more efficient platform to the researcher for their conduct of experiments.

The procurement of animals from other sources is strictly controlled by animal facility management and users are required to adhere to the guidelines provided by CCSEA.

Requests for animals, Conduct of Experiments are channelized by the SAF management committee for smooth, efficient and transparent functioning. For conduct of any experiments by inter or intra institute Investigators, they have to mandatorily obtain approval of the IAEC( Institutional Animal Ethical Committee) before initiating any experiments.

SAF management strictly follows the procedure of documentation and record keeping for the convenience of the researchers and future access to necessary information.

The facility is registered with the CCSEA (Reg.No.1385/GO/ReBi/S/10/CPCSEA). Animal Facility , IISER KOLKATA also provides other research opportunities in collaboration with the Department of Biological Sciences IISER KOLKATA such as Flow cytometry, Confocal imaging and other high end imaging tools, Real Time PCR, Sequencing and other advanced tools and equipments.

  • Rearing, Breeding, Production and provide healthy and specific animals for IISER Kolkata, IAEC approved inter and intra institute scientific research programs.
  • Health Monitoring and quality control through genetic, microbiological and pathological, screening of animals.
  • Conduct Human resource development programs through training courses and organizing Symposium/Workshop/Seminar in the area of laboratory animal science and ethics.
  • Publication and distribution of scientific literature/newsletter on contemporary issues of lab animals.
  • Developing the Pre-clinical experimental animal model in collaboration with Healthcare Institutes.
  • Generation of substantial revenue through services.
Sl. No. Species Strains
1 Mice Wild type strain: C57BL/6 and BALB/c
Knockout strain: CD40L, CD40, Ifit 2 and P2NOS (in the background of C57BL/6)
Nude Mice (in the background of BALB/c)
2 Rat Wistar Albino Rats
3 Rabbit Not Available
4 Fish Zebrafish
5 Bird Chicken

Prof. Jayasri Das Sarma's
Major Research Domains

Prof. Jayasri Das Sarma's lab focusses on the Neurovirology, Neuroimmunology and Cancer Lab group leaded by Prof. Jayasri Das Sarma. The lab is involved in studying the neuroinflammation induced by murine-β-coronavirus: Mouse Hepatitis Virus (MHV) (a prototype of ꞵ-coronavirus that affects mice) can provide insights into the central neuropathobiology of long-term COVID-19 in humans.

One of her research focuses on understanding the cellular and molecular mechanisms of murine β-coronavirus (β-CoV) induced neuro-inflammation (neuro-COVID), which mimics certain neuropathological and clinical features of the human neurological demyelinating disease Multiple Sclerosis (MS). Murine-CoV (m-CoV) infection in mice is the best-explored experimental animal model for studying respiratory, enteric, hepatic, as well as neurological illness due to their differential organ tropism, akin to the differential tropism displayed by different strains of human-CoVs (H-CoVs). Since exploring these mechanisms in humans is difficult, generating an animal model is necessary to determine the genomic control of pathogenic properties and the underlying mechanism to design the therapeutic targets. In this context, we are utilizing our extensive experience of developing a battery of recombinant strains by adopting reverse genetics tools and targeted RNA recombination that demonstrated that the Spike protein (virus-host attachment protein) is a major determinant of pathogenic properties associated with CoVs in the mouse model. Considerable time has been spent understanding the m-CoV, focusing on key mechanisms underlying infection, viral spread, host immune responses, and related pathogenesis. Our research revealed that MHV-A59, a representative murine β-coronavirus, induces meningoencephalomyelitis with optic neuritis during the acute phase of infection and leads to chronic progressive demyelination and optic nerve demyelination in the chronic stage. These characteristics closely resemble the central features of the human neurological disorder, Multiple Sclerosis (MS). While her lab focuses on multiple aspects of Neurovirology and Neuroimmunology induced by Murine-β-coronavirus, it also focuses on establishing gynecological cancer models. Syngeneic Ovarian cancer model was established in C57BL/6 WT mice for studying the tumor suppressing role of Connexin43 in vivo. Cervical cancer model is also established in Nude mice to study the anti-cancer effect of Methanolic Neem Bark extract against human cancer cells HeLa and ME-180 cells.

SAF

The main domains of animal research work in her lab include:

  • Neuroimmune modulations in M-CoV infection
  • Interferon system & its antiviral properties during M-CoV infection
  • MHV-induced Gliopathy
  • Host-cell factors in Murine ꞵ-coronavirus-induced neuropathogenesis
  • LIF signalling in M-CoV-induced demyelination & remyelination
  • Structure-function analysis & genomic control of pathogenic properties of the Mouse Hepatitis Virus
  • Ethnomedicinal plant Neem Bark Extract as antiviral against murine -ꞵ-coronavirus
  • OC43-induced gliopathy
  • Arsenicosis
  • Syngeneic Ovarian cancer model
  • Emerging therapeutic targets for cervical cancer cancers

For more details please visit the lab website link: https://www.iiserkol.ac.in/%7Edassarmaj/

Prof. Rupak Datta's
Major Research Domains

To be updated

Prof. Amirul Islam Mallick's
Major Research Domains

amirul_sir_lab

Prof. Arnab Gupta's
Major Research Domains

To be updated

Prof. Sankar Maiti's
Major Research Domains

To be updated

Prof. Rituparna Sinha Roy's
Major Research Domains

To be updated

Prof. Anuradha Bhat's
Major Research Domains

To be updated

  • Ghosh S, Jana R, Jana S, Basu R, Chatterjee M, Ranawat N, Das Sarma J. Differential expression of cellular prion protein (PrP C ) in mouse hepatitis virus induced neuroinflammation. Journal of NeuroVirology. (Manuscript accepted for publication)
  • Samal SK, Sharma M, Das Sarma J. Isolation and Enrichment of Major Primary Neuroglial Cells from Neonatal Mouse Brain. Bio protocol. 2024 Jan 20;14(2):e4921. doi:10.21769/Bioprotocol.4921. PMID: 38268978; PMCID: PMC10804245.
  • Sharma M, Chakravarty D, Hussain A, Zalavadia A, Burrows A, Rayman P, Sharma N, Kenyon LC, Bergmann C, Sen GC, Das Sarma J. 2023.Ifit2 restricts murine coronavirus spread to the spinal cord white matter and its associated myelin pathology. Journal of Virology 97:e00749-23.https://doi.org/10.1128/jvi.00749-23
  • Kamble M, Saadi F, Kumar S, Saha B, Das Sarma J. Inducible nitric oxide synthase deficiency promotes murine-β-coronavirus induced demyelination. Virology Journal. 2023 Mar 25;20(1):51. doi: 10.1186/s12985-023-02006-1. PMID: 36966345; PMCID: PMC10039690.
  • Mulchandani V, Banerjee A, Vadlamannati AV, Kumar S, Das Sarma J. Connexin 43 trafficking and regulation of gap junctional intercellular communication alters ovarian cancer cell migration and tumorigenesis. Biomedicine & Pharmacotherapy . 2023 Mar; 159:114296. doi: 10.1016/j.biopha.2023.114296. Epub 2023 Jan 24. PMID: 36701988.
  • Bose A, Kasle G, Jana R, Maulik M, Thomas D, Mulchandani V, Mukherjee P, Koval M, Das Sarma J. Regulatory role of endoplasmic reticulum resident chaperone protein ERp29 in anti-murine β-coronavirus host cell response. Journal of Biological Chemistry . 2023 Feb;299(2):102836. doi: 10.1016/j.jbc.2022.102836. Epub 2022 Dec 23. PMID: 36572185; PMCID: PMC9788854.
  • Safiriyu, A. A., Mulchandani, V., Anakkacheri, M. N., Pal, D., & Das Sarma, J. (2023). Proline-Proline Dyad in the Fusion Peptide of the Murine β-Coronavirus Spike Protein's S2 Domain Modulates Its Neuroglial Tropism. Viruses, 15(1), 215.
  • Safiriyu, A.A.; Singh, M.; Kishore, A.; Mulchandani, V.; Maity, D.; Behera, A.; Sinha, B.; Pal, D.; Das Sarma, J. Two Consecutive Prolines in the Fusion Peptide of Murine β- Coronavirus Spike Protein Predominantly Determine Fusogenicity and may be essential but not Sufficient to Cause Demyelination. Viruses 2022, 14, 834.
  • Sarkar L, Oko L, Gupta S, Bubak AN, Das B, Gupta P, Safiriyu AA, Singhal C, Neogi U, Bloom D, Banerjee A, Mahalingam R, Cohrs RJ, Koval M, Shindler KS, Pal D, Nagel M, Das Sarma J. Azadirachta indica A. Juss bark extract and its Nimbin isomers restrict β- coronaviral infection and replication. Virology. 2022 Apr;569:13- 28. doi: 10.1016/j.virol.2022.01.002. Epub 2022 Feb 15. PMID: 35219218; PMCID: PMC8844965.
  • Sengupta S, Addya S, Biswas D, Banerjee P, Das Sarma J. Matrix metalloproteinases and tissue inhibitors of metalloproteinases in murine β-coronavirus-induced neuroinflammation. Virology. 2022 Jan;566:122-135. doi: 10.1016/j.virol.2021.11.012. Epub 2021 Dec 2. PMID: 34906793; PMCID: PMC8648396.
  • Saadi F, Chakravarty D, Kumar S, Kamble M, Saha B, Shindler KS, Das Sarma J. CD40L protects against mouse hepatitis virus-induced neuroinflammatory demyelination. PLoS Pathogens. 2021 Dec 13;17(12):e1010059. doi: 10.1371/journal.ppat.1010059. PMID: 34898656; PMCID: PMC8699621.
  • Kundu S, Saadi F, Sengupta S, Antony GR, Raveendran VA, Kumar R, Kamble MA, Sarkar L, Burrows A, Pal D, Sen GC, Das Sarma J. DJ-1-Nrf2 axis is activated upon murine β-coronavirus infection in the CNS. Brain Disorders. 2021 Dec;4:100021. doi: 10.1016/j.dscb.2021.100021. Epub 2021 Sep 5. PMID: 34514445; PMCID: PMC8418700.
  • Maulik, M., Vasan, L., Bose, A., Datta Chowdhury, S., Sengupta, N., Das Sarma, J., “Amyloid-β regulates gap junction protein Connexin 43 trafficking in cultured primary astrocytes”, Journal of Biological Chemistry 2020, doi: 10.1074/jbc.RA120.013705
  • Chakravarty, D., Saadi, F., Kundu, S., Bose, A., Khan, R.S., Dine, K., Kenyon, L.C., Shindler, K.S., Das Sarma, J. *, “CD4 deficiency causes poliomyelitis and axonal blebbing in murine coronavirus induced neuroinflammation”, Journal of Virology, May 2020; DOI: 10.1128/JVI.00548-20
  • Sarkar, L., Putchala, R.K., Safiriyu, A.A., Das Sarma, J., “Azadirachta indica A. Juss ameliorates Mouse Hepatitis virus-induced neuroinflammatory demyelination by modulating cell-to-cell fusion in an experimental animal model of Multiple Sclerosis”, Frontiers in Cellular Neuroscience ,2020; 14: 116, April 2020, doi: 10.3389/fncel.2020.00116
  • Rout, S.S., Singh, M., Shindler, K.S., Das Sarma, J., “One proline deletion in the fusion peptide of neurotropic mouse hepatitis virus (MHV) restricts retrograde axonal transport and neurodegeneration”, Journal of Biological Chemistry , April 2020, doi: 10.1074/jbc.RA119.011918
  • Singh, M, Kishore, A, Maity, ., Sunanda, P, Krishnarjuna, B, Vappala, S.Raghothama, S, Kenyon, L.C., Pal, D., and Das Sarma, J. , “A proline insertion-deletion in the spike glycoprotein fusion peptide of mouse hepatitis virus strongly alters neuropathology”, Journal of Biological Chemistry 294(20):8064- 8087, 2019; doi: 10.1074/jbc.RA118.004418
  • Bose, A., Basu, R., Maulik, M., Das Sarma, J.*, "Loss of Cx43-mediated functional Gap junction communication in meningeal fibroblasts following Mouse Hepatitis virus infection", Molecular Neurobiology 55(8):6558-6571, 2018; doi: 10.1007/s12035-017- 0861-3
  • Basu, R., Banerjee, K., Bose, A., Das Sarma, J.*, “Mouse Hepatitis virus infection remodels Connexin43- mediated Gap junction intercellular communication in vitro and in vivo”, Journal of Virology 90(5):2586- 2599, 2015; doi: 10.1128/jvi.02420-15
  • Biswas, K., Das Sarma, J., “Effect of microtubule disruption on neuronal spread and replication of demyelinating and non-demyelinating strains of Mouse Hepatitis virus in vitro”, Journal of Virology 88(5):3043-3047, 2013; doi: 10.1128/jvi.02545-13
  • Kishore, A., Kanaujia, A., Nag, S., Rostami, A.M., Kenyon, L.C., Shindler, K.S., Das Sarma, J., “Different mechanisms of inflammation induced in virus and autoimmune- mediated models of Multiple Sclerosis in C57BL6 mice”, BioMed Research International 1-9, 2013; doi: 10.1155/2013/589048