Supratim Sengupta
Professor
Dept: Physical Sciences (DPS)
E-mail: supratim.sen [at] iiserkol.ac.in
All Publications:
- Roy, Suvam and Sengupta, Supratim. 2022."The Effect of Environment on the Evolution and Proliferation of Protocells of Increasing Complexity." Life, 12, 1227
- Pal, Anuran and Sengupta, Supratim. 2022."Network rewiring promotes cooperation in an aspirational learning model." Chaos, 32, 023109
- Roy, Suvam and Sengupta, Supratim. 2021."Evolution towards increasing complexity through functional diversification in a protocell model of the RNA world." Proceedings of the Royal Society B, 288, 9
- Pathak, Spandan; Verma, Prateek; Ram, Sumit K and Sengupta, Supratim. 2020."How strategy environment and wealth shape altruistic behaviour: Cooperation rules affecting wealth distribution in dynamic networks." Proceedings of the Royal Society B, 287, 1-8
- Roy, Suvam; Bapat, Niraja V; Derr, Julien; Rajamani, Sudha and Sengupta, Supratim. 2020." Emergence of ribozyme and tRNA-like structures from mineral-rich muddy pools on prebiotic earth." Journal of Theoretical Biology, 506, 110446
- Mukherjee, Sumit; Mandal, Sukhen Das; Gupta, Nikita; Drory-Retwitzer, Matan; Barash, Danny and Sengupta, Supratim. 2019."RiboD: A Comprehensive Database for Prokaryotic Riboswitches." Bioinformatics, 36, 2
- Kosakowski, Jakub; Verma, Prateek; Sengupta, Supratim and Higgs, Paul G. 2018." The Evolution of Antibiotic Production Rate in a Spatial Model of Bacterial Competition." PLoS One, 13, e0205202
- Verma, Prateek; Nandi, Anjan K and Sengupta, Supratim. 2018."Bribery games on interdependent complex networks." Journal of Theoretical Biology, 450, 43-52
- Mukherjee, Sumit; Retwitzer, Matan Drory; Barash, Danny and Sengupta, Supratim. 2018."Phylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungi." Scientific Reports, 8, 5563
- Mukherjee, Sumit; Barash, Danny and Sengupta, Supratim. 2017."Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria." PLoS One, 12(9), e0184314
- Verma, Prateek; Nandi, Anjan K and Sengupta, Supratim. 2017."Bribery games on inter-dependent regular networks." Scientific Reports, 7, 42735
- Chakraborty, Brinta; Mallick, Anish; Annagiri, Sumana; Sengupta, Supratim and Sengupta, Tapas K. 2016."Deciphering a survival strategy during the interspecific competition between Bacillus cereus MSM-S1 and Pseudomonas sp. MSM-M1." Royal Society Open Science, 1, rsos160438
- Aggarwal, Neha; Bandhu, Ashutosh Vishwa and Sengupta, Supratim. 2016."Finite population analysis of the effect of horizontal gene transfer on the origin of an universal and optimal genetic code." Physical Biology, 13, 036007
- Roy, Basudev; Panja, Mayukh; Ghosh, Subhrokoli; Sengupta, Supratim; Nandy, Dibyendu and Banerjee, Ayan. 2015." Exploring the phase explosion of water using SOM-mediated micro-bubbles." New Journal of Chemistry, 40, 1048-1056
- Mukherjee, Sumit and Sengupta, Supratim. 2015."Riboswitch Scanner: An efficient pHMM-based web-server to detect riboswitches in genomic sequences." Bioinformatics, 32, 776-778
- Retwitzer, Matan Drory; Kifer, Ilona; Sengupta, Supratim; Yakhini, Zohar and Barash, Danny. 2015." An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding." PLoS ONE, 10, e0134262
- Verma, Prateek and Sengupta, Supratim. 2015." Bribe and Punishment: An evolutionary game-theoretic analysis of bribery." PLoS ONE, 10, e0133441
- Sengupta, Supratim and Higgs, Paul G. 2015."Pathways of genetic code evolution in ancient and modern organisms." Journal of Molecular Evolution, 80, 229-243
- Sengupta, Supratim; Aggarwal, Neha and Bandhu, Ashutosh Vishwa. 2015."Two perspectives on the origin of the Standard Genetic Code." Origins of Life and Evolution of Biospheres, 44, 287-291
- Bandhu, Ashutosh Vishwa; Aggarwal, Neha and Sengupta, Supratim. 2014."Revisiting the Physico-Chemical Hypothesis of Code Origin: An Analysis Based on Code-Sequence Coevolution in a Finite Population." Origins of Life and Evolution of Biospheres, 43, 465-489
- Singh, Payal and Sengupta, Supratim. 2012." Phylogenetic analysis and comparative genomics of Purine riboswitch distribution in prokaryotes." Evolutionary Bioinformatics, 8, 589-609
- Sengupta, Supratim; Derr, Julien; Sain, Anirban and Rutenberg, Andrew D. 2012."Stuttering Min oscillations within E. coli bacteria: A stochastic polymerization model ." Physical Biology, 9, 056003
- Dwivedi, Sanjiv K and Sengupta, Supratim. 2012."Classification of HIV-1 Sequences Using Profile Hidden Markov Models." PLoS One, 7, e36566