Supratim Sengupta

Dept: Physical Sciences (DPS)
E-mail: supratim.sen [at]

All Publications:

  1. Mukherjee, Sumit; Mandal, Sukhen Das; Gupta, Nikita; Drory-Retwitzer, Matan; Barash, Danny and Sengupta, Supratim. 2019."RiboD: A Comprehensive Database for Prokaryotic Riboswitches." Bioinformatics, 36, 2
  2. Kosakowski, Jakub; Verma, Prateek; Sengupta, Supratim and Higgs, Paul G. 2018." The Evolution of Antibiotic Production Rate in a Spatial Model of Bacterial Competition." PLoS One, 13, e0205202
  3. Verma, Prateek; Nandi, Anjan K and Sengupta, Supratim. 2018."Bribery games on interdependent complex networks." Journal of Theoretical Biology, 450, 43-52
  4. Mukherjee, Sumit; Retwitzer, Matan Drory; Barash, Danny and Sengupta, Supratim. 2018."Phylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungi." Scientific Reports, 8, 5563
  5. Mukherjee, Sumit; Barash, Danny and Sengupta, Supratim. 2017."Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria." PLoS One, 12(9), e0184314
  6. Verma, Prateek; Nandi, Anjan K and Sengupta, Supratim. 2017."Bribery games on inter-dependent regular networks." Scientific Reports, 7, 42735
  7. Chakraborty, Brinta; Mallick, Anish; Annagiri, Sumana; Sengupta, Supratim and Sengupta, Tapas K. 2016."Deciphering a survival strategy during the interspecific competition between Bacillus cereus MSM-S1 and Pseudomonas sp. MSM-M1." Royal Society Open Science, 1, rsos160438
  8. Aggarwal, Neha; Bandhu, Ashutosh Vishwa and Sengupta, Supratim. 2016."Finite population analysis of the effect of horizontal gene transfer on the origin of an universal and optimal genetic code." Physical Biology, 13, 036007
  9. Roy, Basudev; Panja, Mayukh; Ghosh, Subhrokoli; Sengupta, Supratim; Nandy, Dibyendu and Banerjee, Ayan. 2015." Exploring the phase explosion of water using SOM-mediated micro-bubbles." New Journal of Chemistry, 40, 1048-1056
  10. Mukherjee, Sumit and Sengupta, Supratim. 2015."Riboswitch Scanner: An efficient pHMM-based web-server to detect riboswitches in genomic sequences." Bioinformatics, 32, 776-778
  11. Retwitzer, Matan Drory; Kifer, Ilona; Sengupta, Supratim; Yakhini, Zohar and Barash, Danny. 2015." An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding." PLoS ONE, 10, e0134262
  12. Verma, Prateek and Sengupta, Supratim. 2015." Bribe and Punishment: An evolutionary game-theoretic analysis of bribery." PLoS ONE, 10, e0133441
  13. Sengupta, Supratim and Higgs, Paul G. 2015."Pathways of genetic code evolution in ancient and modern organisms." Journal of Molecular Evolution, 80, 229-243
  14. Sengupta, Supratim; Aggarwal, Neha and Bandhu, Ashutosh Vishwa. 2015."Two perspectives on the origin of the Standard Genetic Code." Origins of Life and Evolution of Biospheres, 44, 287-291
  15. Bandhu, Ashutosh Vishwa; Aggarwal, Neha and Sengupta, Supratim. 2014."Revisiting the Physico-Chemical Hypothesis of Code Origin: An Analysis Based on Code-Sequence Coevolution in a Finite Population." Origins of Life and Evolution of Biospheres, 43, 465-489
  16. Singh, Payal and Sengupta, Supratim. 2012." Phylogenetic analysis and comparative genomics of Purine riboswitch distribution in prokaryotes." Evolutionary Bioinformatics, 8, 589-609
  17. Sengupta, Supratim; Derr, Julien; Sain, Anirban and Rutenberg, Andrew D. 2012."Stuttering Min oscillations within E. coli bacteria: A stochastic polymerization model ." Physical Biology, 9, 056003
  18. Dwivedi, Sanjiv K and Sengupta, Supratim. 2012."Classification of HIV-1 Sequences Using Profile Hidden Markov Models." PLoS One, 7, e36566